We are pleased to announce the launch of the last annotations: http://appris.bioinfo.cnio.es/
- New release of Ensembl (e88) for the local species.
- New APPRIS annotations using the gene dataset of RefSeq:
- Human (versions: 108, 107, and 105)
- Mouse (versions: 106)
- Zebra-fish (versions: 105)
- Rat (versions: 106)
- Pig (versions: 105)
- Chimp (versions: 104)
- New APPRIS annotations using the UniProt proteome from the gene names:
- Human (versions: 2017_03, 2016_06)
- Mouse (versions: 2016_10)
- Zebra-fish (versions: 2016_10)
- Rat (versions: 2016_10)
- Pig (versions: 2017_02)
- Chimp (versions: 2017_02)
- APPRIS-SERVER
- Bug fixed printing the number of peptides.
- Bug fixed: printing the TMH
- Bug fixed: printing the pop-up annotations of Sequence Browser when the transcript id is too long.
- Print the Matador3D and Matador3D2 residues when the data-set comes from Ensembl and UniProt/APPRIS, respectively.
- APPRIS-CODE
- Bugs fixed: parsing the SPADE outputs to be saved in the APPRIS databases.
- Matador3D2: updated PDB database (PDB_70_with_pdb_seq).
- Matador3D2 is used in the final decision of APPRIS when the gene set comes from UniProt. Matador3D is used for the rest of the gene sets (Ensembl and RefSeq).
- Bug fixed: getting on consensus section in the THUMP method.
